Thomas Stoeger

Ethical considerations in utilizing artificial intelligence for analyzing the NHGRI’s History of Genomics and Human Genome Project archives

Hosseini M, Hong S, Holmes K, Wetterstrand K, Donohue C, Amaral LAN, Stoeger T

Journal of eScience Librarianship 13, e811 (2024)

Aging is associated with a systemic length-associated transcriptome imbalance

Stoeger T, Grant RA, McQuattie-Pimentel AC, Anekalla KR, Liu SS, Tejedor-Navarro H, Singer BD, Abdala-Valencia H, Schwake M, Tetreault M-P, Perlman H, Balch WE, Chandel NE, Ridge KM, Sznajder JI, Morimoto RI, Misharin AV, Budinger GRS, Amaral LAN

Nature Aging 2, 1191-1206 (2022)

Protection of the human gene research literature from contract cheating organizations known as research paper mills

Jennifer A Byrne, Yasunori Park, Reese A K Richardson, Pranujan Pathmendra, Mengyi Sun, Thomas Stoeger

Nucleic Acids Research, 0 (2022)

Mathematical models to study the biology of pathogens and the infectious diseases they cause

Joao B Xavier, Jonathan M Monk, Saugat Poudel, Charles J Norsigian, Anand V Sastry, Chen Liao, Jose Bento, Marc A Suchard, Mario L Arrieta-Ortiz, Eliza JR Peterson, Nitin S Baliga, Thomas Stoeger, Felicia Ruffin, Reese AK Richardson, Catherine A Gao, Thomas D Horvath, Anthony M Haag, Qinglong Wu, Tor Savidge, Michael R Yeaman

iScience, 104079 (2022)

The characteristics of early-stage research into human genes are substantially different from subsequent research

Stoeger T, Amaral LAN

PLOS Biology 20, e3001520 (2022)

Meta-Research: COVID-19 research risks ignoring important host genes due to pre-established research patterns

Stoeger T, Amaral LAN

eLife 9, e61981 (2020)

Reply to "Far away from the lamppost"

Stoeger T, Gerlach M, Morimoto RI, Amaral LAN

PLOS Biology 16, e3000075 (2018)

Large-scale investigation of the reasons why potentially important genes are ignored

Stoeger T, Gerlach M, Morimoto RI, Amaral LAN

PLOS Biology 16, e2006643 (2018)

Post-transcriptional control of executioner caspases by RNA-binding proteins

Subasic D, Stoeger T, Eisenring S, Matia-González AM, Imig J, Zheng X, Xiong L, Gisler P, Eberhard R, Holtackers R, Gerber AP, Pelkmans L, Hengartner MO

Genes Dev 30(19), 2213-2225 (2016)

Passive noise filtering by cellular compartmentalization

Stoeger*, T., Battich*, N., and Pelkmans, L.

Cell 164, 1151 (2016)

Control of transcript variability in single mammalian cells

Battich*, N., Stoeger*, T., and Pelkmans, L.

Cell 163, 1596 (2015)

Computer vision for image-based transcriptomics.

Stoeger*, T., Battich*, N., Herrmann, M., Yakimovich, Y., and Pelkmans, L.

Methods 85, 44 (2015)

Cell-intrinsic adaptation of lipid composition to local crowding drives social behavior

Frechin, M., Stoeger, T., Daetwyler, S., Gehin, S., Battich, N., Damm, E.M., Stergiou, L., Riezman, H. and Pelkmans, L.