Thomas Stoeger

Postdoc

Publications by Citations

Passive noise filtering by cellular compartmentalization
Stoeger*, T., Battich*, N., and Pelkmans, L.
Cell 164, 1151 (2016)
Control of transcript variability in single mammalian cells
Battich*, N., Stoeger*, T., and Pelkmans, L.
Cell 163, 1596 (2015)
Cell-intrinsic adaptation of lipid composition to local crowding drives social behavior
Frechin, M., Stoeger, T., Daetwyler, S., Gehin, S., Battich, N., Damm, E.M., Stergiou, L., Riezman, H. and Pelkmans, L.
Nature 523, 88 (2015)
Computer vision for image-based transcriptomics.
Stoeger*, T., Battich*, N., Herrmann, M., Yakimovich, Y., and Pelkmans, L.
Methods 85, 44 (2015)
Dachsous-dependent asymmetric localization of spiny-legs determines planar cell polarity orientation in Drosophila
Ayukawa T, Akiyama M, Mummery-Widmer JL, Stoeger T, Sasaki J, Knoblich JA, Senoo H, Sasaki T, Yamazaki M
Cell Reports 8, 610 (2014)
Image-based transcriptomics in thousands of single human cells at single-molecule resolution.
Battich*, N., Stoeger*, T., and Pelkmans, L.
Nature Methods 10, 1127 (2013)
Predicting functional gene interactions with the hierarchical interaction score
Snijder, B., Liberali, P., Frechin, M., Stoeger, T., and Pelkmans, L.
Nature Methods 10, 1089 (2013)
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi
Mummery-Widmer*, J.L., Yamazaki*, M., Stoeger, T., Novatchkova, M., Bhalerao, S., Chen, D., Dietzl, G., Dickson, B.J., and Knoblich, J.A.
Nature 458, 987 (2009)
Post-transcriptional control of executioner caspases by RNA-binding proteins
Subasic D, Stoeger T, Eisenring S, Matia-González AM, Imig J, Zheng X, Xiong L, Gisler P, Eberhard R, Holtackers R, Gerber AP, Pelkmans L, Hengartner MO
Genes Dev 30(19), 2213-2225 (2016)
Large-scale investigation of the reasons why potentially important genes are ignored
Stoeger T, Gerlach M, Morimoto RI, Amaral LAN
PLOS Biology 16, e2006643 (2018)
Reply to "Far away from the lamppost"
Stoeger T, Gerlach M, Morimoto RI, Amaral LAN
PLOS Biology 16, e3000075 (2018)
Meta-Research: COVID-19 research risks ignoring important host genes due to pre-established research patterns
Stoeger T, Amaral LAN
eLife 9, e61981 (2020)
The characteristics of early-stage research into human genes are substantially different from subsequent research
Stoeger T, Amaral LAN
PLOS Biology 20, e3001520 (2022)
Mathematical models to study the biology of pathogens and the infectious diseases they cause
Joao B Xavier, Jonathan M Monk, Saugat Poudel, Charles J Norsigian, Anand V Sastry, Chen Liao, Jose Bento, Marc A Suchard, Mario L Arrieta-Ortiz, Eliza JR Peterson, Nitin S Baliga, Thomas Stoeger, Felicia Ruffin, Reese AK Richardson, Catherine A Gao, Thomas D Horvath, Anthony M Haag, Qinglong Wu, Tor Savidge, Michael R Yeaman
iScience, 104079 (2022)
Aging is associated with a systemic length-associated transcriptome imbalance
Stoeger T, Grant RA, McQuattie-Pimentel AC, Anekalla KR, Liu SS, Tejedor-Navarro H, Singer BD, Abdala-Valencia H, Schwake M, Tetreault M-P, Perlman H, Balch WE, Chandel NE, Ridge KM, Sznajder JI, Morimoto RI, Misharin AV, Budinger GRS, Amaral LAN
Nature Aging 2, 1191-1206 (2022)
Protection of the human gene research literature from contract cheating organizations known as research paper mills
Jennifer A Byrne, Yasunori Park, Reese A K Richardson, Pranujan Pathmendra, Mengyi Sun, Thomas Stoeger
Nucleic Acids Research, 0 (2022)
Ethical considerations in utilizing artificial intelligence for analyzing the NHGRI’s History of Genomics and Human Genome Project archives
Hosseini M, Hong S, Holmes K, Wetterstrand K, Donohue C, Amaral LAN, Stoeger T
Journal of eScience Librarianship 13, e811 (2024)